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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10811542_10816803_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10811542 - 10816803
Intron Length:
5262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATGTTCCCATTT
Flanking Amino Acid:
DTSEDQDGDSRDQCPLTDEQ
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.3
0.64
0.9
74.3
35.1
Minor 5ss
30.2
-2.3
3.3
39.5
46.1
Minor BPS
44
-0.3
2
62.78
41.8

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028304
10769965 - 10821551
51587