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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10826433_10827367_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10826433 - 10827367
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ACTTCATTATCA
Flanking Amino Acid:
ADAIGAESLERLFSSYPQTK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.8
0.74
0.8
74.1
36.6
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
59
0.28
1.9
71.02
41

Associated Gene:

Gene:
HBZ
Ensembl Gene ID:
ENSAPLG00000005686
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005878
10826338 - 10828435
2098