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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10835105_10835208_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10835105 - 10835208
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
ACCTCCCCCACT
Flanking Amino Acid:
KLRVDPVNFKFLGHCFLVVV
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
44.7
-0.3
2.2
63.11
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016406
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017123
10834655 - 10835337
683