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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10867449_10867618_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10867449 - 10867618
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTGTCAGTT
Flanking Amino Acid:
AYGFDFYILKTPKADLGSKL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.8
87
20.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.2
0.57
0.9
69.3
36.9
Minor 5ss
20.2
-3.4
4
32.7
42.5
Minor BPS
42.7
-0.4
2.3
61.77
42.9

Associated Gene:

Gene:
MRPL28
Ensembl Gene ID:
ENSAPLG00000006257
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006478
10866925 - 10868830
1906