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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10867754_10868376_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10867754 - 10868376
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAG
U12 Branch Point Sequence:
CCTTTTGTCACA
Flanking Amino Acid:
RREAIYDKYKEFVIPEEEAE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
45
-0.3
1.5
54.7
40.8
Major PPT
80
0.68
0.8
74.8
33.5
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
44.5
-0.4
2.3
57.25
43.4

Associated Gene:

Gene:
MRPL28
Ensembl Gene ID:
ENSAPLG00000006257
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006478
10866925 - 10868830
1906