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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10868464_10868752_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10868464 - 10868752
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
AATAGTTTAACC
Flanking Amino Acid:
IEKQRLLEKKDPVPLFKVYA
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
57.4
0.21
1.8
66.69
38.7

Associated Gene:

Gene:
MRPL28
Ensembl Gene ID:
ENSAPLG00000006257
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006478
10866925 - 10868830
1906