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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1087159_1087354_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1087159 - 1087354
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAG
U12 Branch Point Sequence:
CCGGCCACAGCC
Flanking Amino Acid:
ASYMAAVNSSGNCYVWNLTG
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.2
38.2
Major BPS
39.5
-0.6
1.5
42.6
40.5
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
40.2
-1.1
2.9
52.1
44.7
Minor BPS
39.3
-0.8
2
42.99
44.3

Associated Gene:

Gene:
MLST8
Ensembl Gene ID:
ENSAPLG00000005785
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005994
1085863 - 1090614
4752
ENSAPLT00000042358
1085863 - 1090614
4752