Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1087508_1089634_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1087508 - 1089634

Intron Length:

2127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAG

U12 Branch Point Sequence:

TTTCCCAGAGTT

Flanking Amino Acid:

INCVCLHPNQAELIVGDQSG

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.7

84.8

25.1

Major BPS

49.3

-0

1.7

66.4

42.2

Major PPT

96.3

1.04

0.5

92.6

17.2

Minor 5ss

31.8

-2.1

3.3

42.9

44.7

Minor BPS

49.1

0.01

1.9

75.93

40.3

Associated Gene:

Gene:

MLST8

Ensembl Gene ID:

ENSAPLG00000005785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042358

1085863 - 1090614

4752

ENSAPLT00000005994

1085863 - 1090614

4752