Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10899517_10937607_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10899517 - 10937607

Intron Length:

38091

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTCCTTTTAATT

Flanking Amino Acid:

TRRYSEGREFRHGSWREPVN

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

35.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.5

0.89

0.7

81.7

35.4

Minor 5ss

34.3

-1.8

3.4

50.5

Minor BPS

64.6

0.54

1.2

73.2

38.3

Associated Gene:

Gene:

AXIN1

Ensembl Gene ID:

ENSAPLG00000006260

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006512

10898289 - 10973693

75405