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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1092881_1093076_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1092881 - 1093076
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
CCTCCCCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TCCTCCCCACGC
Flanking Amino Acid:
PLVQTFGHVEFILKHEKYQH
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
67.6
0.4
0.8
61.6
27.7
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
40.3
-0.7
2.2
50.84
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005863
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006056
1091793 - 1095560
3768
ENSAPLT00000033631
1091795 - 1095560
3766