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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1093510_1093604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1093510 - 1093604
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGGA
5'SS Class:
major
3'SS Sequence:
CCCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATGT
Flanking Amino Acid:
LRKISTGALRESGIAKQVSP
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
62.1
38.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
75.6
0.58
0.8
68.4
31.9
Minor 5ss
23.9
-3
3
20.9
37.5
Minor BPS
42.3
-0.5
2.3
59.91
49.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005863
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033631
1091795 - 1095560
3766
ENSAPLT00000006056
1091793 - 1095560
3768