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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10937749_10947322_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10937749 - 10947322
Intron Length:
9574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTATTCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TGTTGCTTTATT
Flanking Amino Acid:
ADTMSLTDSSVDGIPPYRLR
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
80.1
0.68
1
77.4
36.8
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
59.2
0.37
2.1
80.7
41.2

Associated Gene:

Gene:
AXIN1
Ensembl Gene ID:
ENSAPLG00000006260
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006512
10898289 - 10973693
75405