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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1094610_1094765_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1094610 - 1094765
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGCGTGGC
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGGCTCTCACCT
Flanking Amino Acid:
FQSLQLEQGTCEGRGAFPGV
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
59.5
39.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.7
0.58
0.8
69
31.7
Minor 5ss
26.7
-2.7
3.2
31.6
37.5
Minor BPS
45.8
-0.2
1.8
58.99
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005863
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006056
1091793 - 1095560
3768