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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10972336_10973237_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10972336 - 10973237
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGTTTCTGGGTT
Flanking Amino Acid:
KELLTKKGNYRYYFKKVSDE
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
64.9
0.37
1
67
29.8
Major PPT
76.9
0.6
1
72.6
42.4
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
41.7
-0.5
3.5
71.7
39.7

Associated Gene:

Gene:
AXIN1
Ensembl Gene ID:
ENSAPLG00000006260
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006512
10898289 - 10973693
75405