About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10976658_10976818_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10976658 - 10976818
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GCCTCTCGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
CCTCCCGGCACT
Flanking Amino Acid:
DETKNVFVKFYAPWCSHCKE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.2
37.5
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
66.2
0.37
0.9
60.7
35.2
Minor 5ss
38.2
-1.3
3.4
60.6
43.7
Minor BPS
42.2
-0.5
2.4
61.75
47.8

Associated Gene:

Gene:
PDIA2
Ensembl Gene ID:
ENSAPLG00000006378
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006635
10976383 - 10980531
4149