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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10976940_10978451_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10976940 - 10978451
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTGTCCCCACAG
Flanking Amino Acid:
VQAVLDGKVKPHLLSQTPPE
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
72.9
0.52
0.9
65.6
36.2
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
43
-0.6
2.2
53.78
46.5

Associated Gene:

Gene:
PDIA2
Ensembl Gene ID:
ENSAPLG00000006378
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006635
10976383 - 10980531
4149