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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10978647_10978729_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10978647 - 10978729
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAG
U12 Branch Point Sequence:
CTGGCCTCAGTG
Flanking Amino Acid:
RKAASNFRGKVLFVVVDVDG
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
46.3
-0.2
1.6
53.3
44.2
Major PPT
69.3
0.43
0.9
61.4
35
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
44.7
-0.5
1.9
46.94
46.5

Associated Gene:

Gene:
PDIA2
Ensembl Gene ID:
ENSAPLG00000006378
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006635
10976383 - 10980531
4149