About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10978856_10978932_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10978856 - 10978932
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
CGGCCCTCACCA
Flanking Amino Acid:
LELVMEFSNETSSRIFGANI
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
63.1
39.8
Major BPS
53
0.08
1.4
63
42.7
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
30.9
-2.2
3.4
42.7
44.4
Minor BPS
46.7
-0.2
1.9
53.79
44.4

Associated Gene:

Gene:
PDIA2
Ensembl Gene ID:
ENSAPLG00000006378
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006635
10976383 - 10980531
4149