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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10979008_10979088_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10979008 - 10979088
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
GGACCCAGCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TCCCTGTGGACC
Flanking Amino Acid:
RAGEGVGGSMGLNAAELTRL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.3
36.5
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
51.1
0.03
1
42.6
37.1
Minor 5ss
26.8
-2.7
3.2
31.2
36.7
Minor BPS
42.5
-0.6
2.1
50.93
40.4

Associated Gene:

Gene:
PDIA2
Ensembl Gene ID:
ENSAPLG00000006378
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006635
10976383 - 10980531
4149