Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10979239_10979294_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10979239 - 10979294

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AGG|GCCAGGGCA

5'SS Class:

major

3'SS Sequence:

CGAGGCGGCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTGCAG

U12 Branch Point Sequence:

CGTGCAGGACCT

Flanking Amino Acid:

GQGPGRGWARAFYEAAGEVV

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.2

66.4

35.7

Major BPS

40.6

-0.5

1.6

48.7

45.1

Major PPT

48.4

-0

1.1

34.4

40.8

Minor 5ss

14.2

-4.1

3.5

13.3

Minor BPS

36.3

-0.9

2.4

54.31

46.8

Associated Gene:

Gene:

PDIA2

Ensembl Gene ID:

ENSAPLG00000006378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006635

10976383 - 10980531

4149