About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10981524_10981889_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10981524 - 10981889
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCCAT
U12 Branch Point Sequence:
CATGCCACAGCA
Flanking Amino Acid:
VDYRVKVSFKVNREIVCGLK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
53.4
0.08
1.4
64.2
43
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
42.8
-0.5
2
53.91
44.2

Associated Gene:

Gene:
ARHGDIG
Ensembl Gene ID:
ENSAPLG00000004065
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004153
10981179 - 10983286
2108