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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10981967_10982049_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10981967 - 10982049
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGCCTCCCACCG
Flanking Amino Acid:
APGPITMDLTGDLEVLQSRP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
68.8
0.42
0.8
62
27
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
38.9
-0.9
2
42.16
42.5

Associated Gene:

Gene:
ARHGDIG
Ensembl Gene ID:
ENSAPLG00000004065
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004153
10981179 - 10983286
2108