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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10989146_10989223_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10989146 - 10989223
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GGGCCGGCCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
AGGGCCTTGACG
Flanking Amino Acid:
AKNMDYYKREIEYCRKAMAR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
50.7
0.02
1
38.5
40
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
58.8
0.13
1.6
57.44
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027758
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037796
10988570 - 10990941
2372