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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10989575_10989704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10989575 - 10989704
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
GTGTCACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTGTCACTGACA
Flanking Amino Acid:
DTTYWAMNAPTVLTPTKLRV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
69.7
41.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
64.1
0.32
1.1
58.2
42.3
Minor 5ss
42
-0.9
2.8
52.9
37.1
Minor BPS
49.6
-0
2
65.54
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027758
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034658
10988570 - 10990941
2372
ENSAPLT00000021498
10988726 - 10994216
5491
ENSAPLT00000037796
10988570 - 10990941
2372