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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10989821_10990006_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10989821 - 10990006
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCCCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCCTCCCCAACA
Flanking Amino Acid:
LLEFLKKEFSAENLSFWEAC
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
59.8
45.2
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
73.3
0.52
0.7
64.8
30.7
Minor 5ss
27.6
-2.6
2.9
29.2
38
Minor BPS
49.2
-0
2
59.96
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027758
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037796
10988570 - 10990941
2372
ENSAPLT00000034658
10988570 - 10990941
2372
ENSAPLT00000021498
10988726 - 10994216
5491