Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10990095_10990209_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10990095 - 10990209

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGCACT

5'SS Class:

major

3'SS Sequence:

GTGCAACCCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCGTCAC

U12 Branch Point Sequence:

CGTTCGTCACCG

Flanking Amino Acid:

RIAEIVDSIYQQFLAPGATR

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.1

65.5

40.2

Major BPS

62.4

0.31

1.2

65.3

41.6

Major PPT

59.3

0.21

47.8

40.4

Minor 5ss

38.8

-1.3

55.8

42.2

Minor BPS

42.9

-0.6

2.4

51.98

48.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027758

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037796

10988570 - 10990941

2372

ENSAPLT00000034658

10988570 - 10990941

2372