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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10995073_10995224_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10995073 - 10995224
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAG
U12 Branch Point Sequence:
TCTGTGTTACAG
Flanking Amino Acid:
NNTDQIIAFSAALFERSRHA
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
48.4
-0.1
1.5
45
39.9
Major PPT
77.9
0.63
0.9
71.2
38.5
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
40.5
-0.8
2.3
47.05
46.3

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833