About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10996348_10996780_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10996348 - 10996780
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAAG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CGCTCTGTGATC
Flanking Amino Acid:
ESEIGPNRKKVMIVEGGSGA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
65.4
40
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
75
0.56
0.9
70
36.6
Minor 5ss
35.3
-1.7
2.7
40.2
45.6
Minor BPS
46.2
-0.3
2
53.08
39.8

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833