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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10999571_11001761_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10999571 - 11001761
Intron Length:
2191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
LIIFVATGDKIKTFIHSGRN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71
0.47
1
66
40.8
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833