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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11001893_11005706_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11001893 - 11005706
Intron Length:
3814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTAGTGAACA
Flanking Amino Acid:
PASLTALNQTGDVQWRHSND
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
77.2
0.61
0.8
69.2
37
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
54.5
0.14
2.3
77.54
38.9

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833