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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11005893_11006211_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11005893 - 11006211
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGAT
5'SS Class:
major
3'SS Sequence:
CTCTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GTCCCTCTGATG
Flanking Amino Acid:
SNFNHTCLDEGLPSPCAFLA
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
86.4
0.82
0.7
84.5
23.5
Minor 5ss
38.5
-1.3
3.5
57.3
47.4
Minor BPS
46.1
-0.4
1.7
49.13
38.9

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833