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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11006329_11007390_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11006329 - 11007390
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
ATCTCTTTTACA
Flanking Amino Acid:
RTWFQYYENAVAYQFLAIED
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
85.5
0.8
0.8
79.9
31.5
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
66
0.5
1.6
73.23
38.5

Associated Gene:

Gene:
FAM234A
Ensembl Gene ID:
ENSAPLG00000006890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007173
10994861 - 11007693
12833