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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11022909_11023737_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11022909 - 11023737
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
AATTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TATGGCTGAAAT
Flanking Amino Acid:
QIREKLDQLRKTVAEKQEKR
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.5
44.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
47.1
-0.3
2.8
56.4
47.8
Minor BPS
48.9
-0
2.1
71.51
44.7

Associated Gene:

Gene:
LUC7L
Ensembl Gene ID:
ENSAPLG00000007050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007354
11017140 - 11036059
18920