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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11023915_11024344_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11023915 - 11024344
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TTTTCCTTCCTT
Flanking Amino Acid:
KVRAKKKEAEEEYRNSMPAS
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
86.7
0.82
0.6
84.9
22.8
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
48.3
-0
3.6
87.41
38.9

Associated Gene:

Gene:
LUC7L
Ensembl Gene ID:
ENSAPLG00000007050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007354
11017140 - 11036059
18920