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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11024489_11025173_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11024489 - 11025173
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATCC
5'SS Class:
weak_major
3'SS Sequence:
TTATTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TAATTCTTATTT
Flanking Amino Acid:
EEISAEVSAKAEKVHELNED
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
62.2
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85
0.79
0.7
81.8
29.9
Minor 5ss
53
0.1
2.4
69.3
41.4
Minor BPS
64.9
0.55
1.5
77.6
39

Associated Gene:

Gene:
LUC7L
Ensembl Gene ID:
ENSAPLG00000007050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007354
11017140 - 11036059
18920