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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11025285_11025972_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11025285 - 11025972
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAATG
Flanking Amino Acid:
KERDLFFELDAMDHLESFIA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.7
0.42
1.1
62
43.2
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
65.2
0.34
1.5
67.49
40.7

Associated Gene:

Gene:
LUC7L
Ensembl Gene ID:
ENSAPLG00000007050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007354
11017140 - 11036059
18920