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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11026072_11034347_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11026072 - 11034347
Intron Length:
8276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTCTTTTCAACA
Flanking Amino Acid:
CCPHDILAGTRMDLGECTKI
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
66
0.5
1.5
74.67
37.4

Associated Gene:

Gene:
LUC7L
Ensembl Gene ID:
ENSAPLG00000007050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007354
11017140 - 11036059
18920