Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11042860_11043116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11042860 - 11043116

Intron Length:

257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAA

U12 Branch Point Sequence:

TGCCACTGAATT

Flanking Amino Acid:

APVTSHSLTAREVMSTPVTC

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

67.1

44.6

Major BPS

0.3

34.1

Major PPT

78.3

0.64

0.7

73.1

25.2

Minor 5ss

30.7

-2.2

3.4

40.1

Minor BPS

51.9

0.14

1.7

68.49

Associated Gene:

Gene:

CLCN7

Ensembl Gene ID:

ENSAPLG00000007385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035294

11041830 - 11054139

12310

ENSAPLT00000007803

11041830 - 11056734

14905