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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11053801_11056599_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11053801 - 11056599
Intron Length:
2799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
GGGAGCTGACCC
Flanking Amino Acid:
LNGTGHGARQFTPSLLRPGQ
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
40.6
-0.7
2
45.59
42.4

Associated Gene:

Gene:
CLCN7
Ensembl Gene ID:
ENSAPLG00000007385
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007803
11041830 - 11056734
14905