Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11061768_11063089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11061768 - 11063089

Intron Length:

1322

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAT|GCAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTCAC

U12 Branch Point Sequence:

TGACCTAAGACT

Flanking Amino Acid:

SNMVTVAAVNGSSPAGGCLI

Intron Amino Acid Position:

467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

1.2

81.1

32.2

Major BPS

59.5

0.24

1.2

63.3

35.6

Major PPT

78.3

0.64

0.9

72.8

37.4

Minor 5ss

-2.4

47.3

41.1

Minor BPS

45.1

-0.3

1.9

63.17

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008466

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027723

11059243 - 11064028

4786

ENSAPLT00000008798

11059243 - 11065577

6335