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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11066115_11066165_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11066115 - 11066165
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTGATGGC
5'SS Class:
weak_major
3'SS Sequence:
CTCCAGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAC
U12 Branch Point Sequence:
TCCTCCTGCAGA
Flanking Amino Acid:
AVSDHYPVEVKTTPRTALCS
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.3
59.4
39.3
Major BPS
49.6
-0
1.1
46.4
38.9
Major PPT
67.2
0.39
0.9
57
38.4
Minor 5ss
18.7
-3.6
3.8
26
30
Minor BPS
46.7
-0.2
2.2
59.45
46.4

Associated Gene:

Gene:
DNASE1L2
Ensembl Gene ID:
ENSAPLG00000008612
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042625
11065946 - 11069255
3310