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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11067449_11067559_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11067449 - 11067559
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
AGGCTCACACCT
Flanking Amino Acid:
FILRVSAPRTKAGEFVMVPL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
40.3
-0.6
1.9
53.69
41.2

Associated Gene:

Gene:
DNASE1L2
Ensembl Gene ID:
ENSAPLG00000008612
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008951
11066153 - 11069255
3103