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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11067887_11068732_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11067887 - 11068732
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
TTGCATTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTCCTTTGCATT
Flanking Amino Acid:
AVTELMEQLNSVSSAPYDYE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.3
0.66
0.9
73.5
36.7
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
43.6
-0.4
1.8
57.95
39.6

Associated Gene:

Gene:
DNASE1L2
Ensembl Gene ID:
ENSAPLG00000008612
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008951
11066153 - 11069255
3103