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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11077063_11077332_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11077063 - 11077332
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCCCC
5'SS Class:
major
3'SS Sequence:
CGTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GTGTATTTCACG
Flanking Amino Acid:
VPKERGVPPKRLNSLQELQL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
56.7
42.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
84.2
0.77
0.8
81.1
30.9
Minor 5ss
32.3
-2
3.2
42.1
44.9
Minor BPS
48.4
-0.2
2
56.68
44.8

Associated Gene:

Gene:
C7orf26
Ensembl Gene ID:
ENSAPLG00000008674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009026
11076868 - 11108149
31282