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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11077555_11078814_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11077555 - 11078814
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGTTC
5'SS Class:
major
3'SS Sequence:
CTCATCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTCATCC
Flanking Amino Acid:
VLECAAFWLQRTPAVYCVRL
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.2
36.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.9
0.49
0.8
65.5
30.3
Minor 5ss
34.8
-1.7
3.6
49.3
47.2
Minor BPS
49.5
-0
1.8
63.7
41.8

Associated Gene:

Gene:
C7orf26
Ensembl Gene ID:
ENSAPLG00000008674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009026
11076868 - 11108149
31282