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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11078981_11080801_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11078981 - 11080801
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
CTGTGCTTACTG
Flanking Amino Acid:
AVTALYDLSSDDLIPPSELL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
82
0.72
0.8
76.5
32.1
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
47.8
-0.3
2.1
54.19
47.5

Associated Gene:

Gene:
C7orf26
Ensembl Gene ID:
ENSAPLG00000008674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009026
11076868 - 11108149
31282