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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11081330_11083956_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11081330 - 11083956
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTACCCTCATT
Flanking Amino Acid:
MASGALLCTRDDLRTVCSRL
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
83.4
0.75
0.8
80.7
31.3
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
55
0.24
2.1
81.49
40.2

Associated Gene:

Gene:
C7orf26
Ensembl Gene ID:
ENSAPLG00000008674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009026
11076868 - 11108149
31282