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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11083997_11085412_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11083997 - 11085412
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CTGCCGATAACT
Flanking Amino Acid:
RTVCSRLPHNNLLQLVISGP
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
84.8
0.78
0.7
80.7
24.4
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
47.8
-0
2.3
70.21
46.3

Associated Gene:

Gene:
C7orf26
Ensembl Gene ID:
ENSAPLG00000008674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009026
11076868 - 11108149
31282