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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11097639_11098937_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11097639 - 11098937
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TATCTCTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTACTAAATA
Flanking Amino Acid:
IKSRTKVHKEDGDILASSFP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.6
0.58
0.9
73.9
35.4
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
59.8
0.31
1.9
71.87
40.7

Associated Gene:

Gene:
NAA60
Ensembl Gene ID:
ENSAPLG00000008720
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038267
11097385 - 11102622
5238
ENSAPLT00000031389
11096828 - 11102622
5795
ENSAPLT00000009066
11097349 - 11102622
5274