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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1116911_1117140_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1116911 - 1117140
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATGTGCTCACCC
Flanking Amino Acid:
QAAVDIKDNKGMRPLHYAAW
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.98
0.9
86.7
21.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
65.6
0.35
0.9
58.1
32.4
Minor 5ss
18.2
-3.7
3.6
26.4
36.8
Minor BPS
46.5
-0.2
2.2
60.73
44.6

Associated Gene:

Gene:
CASKIN1
Ensembl Gene ID:
ENSAPLG00000024608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043102
1114638 - 1130066
15429
ENSAPLT00000024626
1114638 - 1130066
15429
ENSAPLT00000017998
1114638 - 1129507
14870